1YED image
Deposition Date 1997-04-15
Release Date 1997-10-15
Last Version Date 2024-11-06
Entry Detail
PDB ID:
1YED
Title:
STRUCTURE OF A CATALYTIC ANTIBODY IGG2A FAB FRAGMENT (D2.4)
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:IGG1 FAB FRAGMENT (D.2.4)
Gene (Uniprot):Ighg1
Chain IDs:C (auth: H), D (auth: B)
Chain Length:226
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:IGG1 FAB FRAGMENT (D.2.4)
Chain IDs:A (auth: L), B (auth: A)
Chain Length:219
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural convergence in the active sites of a family of catalytic antibodies.
Science 275 1140 1142 (1997)
PMID: 9027317 DOI: 10.1126/science.275.5303.1140

Abstact

The x-ray structures of three esterase-like catalytic antibodies identified by screening for catalytic activity the entire hybridoma repertoire, elicited in response to a phosphonate transition state analog (TSA) hapten, were analyzed. The high resolution structures account for catalysis by transition state stabilization, and in all three antibodies a tyrosine residue participates in the oxyanion hole. Despite significant conformational differences in their combining sites, the three antibodies, which are the most efficient among those elicited, achieve catalysis in essentially the same mode, suggesting that evolution for binding to a single TSA followed by screening for catalysis lead to antibodies with structural convergence.

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Primary Citation of related structures