1Y6M image
Deposition Date 2004-12-06
Release Date 2005-05-03
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1Y6M
Keywords:
Title:
Crystal structure of Epstein-Barr virus IL-10 complexed with the soluble IL-10R1 chain
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.31
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 32 1 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Viral interleukin-10 homolog
Gene (Uniprot):BCRF1
Chain IDs:A (auth: L)
Chain Length:145
Number of Molecules:1
Biological Source:Human herpesvirus 4
Polymer Type:polypeptide(L)
Molecule:Interleukin-10 receptor alpha chain
Gene (Uniprot):IL10RA
Mutations:N29Q, N53Q, N89Q, N133Q, N156Q, N168Q
Chain IDs:B (auth: R)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Same structure, different function crystal structure of the Epstein-Barr virus IL-10 bound to the soluble IL-10R1 chain.
Structure 13 551 564 (2005)
PMID: 15837194 DOI: 10.1016/j.str.2005.01.016

Abstact

Human IL-10 (hIL-10) is a cytokine that modulates diverse immune responses. The Epstein-Barr virus (EBV) genome contains an IL-10 homolog (vIL-10) that shares high sequence and structural similarity with hIL-10. Although vIL-10 suppresses inflammatory responses like hIL-10, it cannot activate many other immunostimulatory functions performed by the cellular cytokine. These functional differences have been correlated with the approximately 1000-fold lower affinity of vIL-10, compared to hIL-10, for the IL-10R1 receptor chain. To define the structural basis for these observations, crystal structures of vIL-10 and a vIL-10 point mutant were determined bound to the soluble IL-10R1 receptor fragment (sIL-10R1) at 2.8 and 2.7 A resolution, respectively. The structures reveal that subtle changes in the conformation and dynamics of the vIL-10 AB and CD loops and an orientation change of vIL-10 on sIL-10R1 are the main factors responsible for vIL-10's reduced affinity for sIL-10R1 and its distinct biological profile.

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