1Y64 image
Deposition Date 2004-12-03
Release Date 2005-01-18
Last Version Date 2025-03-26
Entry Detail
PDB ID:
1Y64
Title:
Bni1p Formin Homology 2 Domain complexed with ATP-actin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.05 Å
R-Value Free:
0.31
R-Value Work:
0.28
R-Value Observed:
0.31
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Actin, alpha skeletal muscle
Gene (Uniprot):ACTA1
Chain IDs:A
Chain Length:375
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:BNI1 protein
Gene (Uniprot):BNI1
Chain IDs:B
Chain Length:443
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HIC A HIS 4-METHYL-HISTIDINE
Primary Citation
Structural basis of actin filament nucleation and processive capping by a formin homology 2 domain
Nature 433 488 494 (2005)
PMID: 15635372 DOI: 10.1038/nature03251

Abstact

The conserved formin homology 2 (FH2) domain nucleates actin filaments and remains bound to the barbed end of the growing filament. Here we report the crystal structure of the yeast Bni1p FH2 domain in complex with tetramethylrhodamine-actin. Each of the two structural units in the FH2 dimer binds two actins in an orientation similar to that in an actin filament, suggesting that this structure could function as a filament nucleus. Biochemical properties of heterodimeric FH2 mutants suggest that the wild-type protein equilibrates between two bound states at the barbed end: one permitting monomer binding and the other permitting monomer dissociation. Interconversion between these states allows processive barbed-end polymerization and depolymerization in the presence of bound FH2 domain. Kinetic and/or thermodynamic differences in the conformational and binding equilibria can explain the variable activity of different FH2 domains as well as the effects of the actin-binding protein profilin on FH2 function.

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Primary Citation of related structures