1Y4M image
Deposition Date 2004-12-01
Release Date 2005-11-15
Last Version Date 2024-11-06
Entry Detail
PDB ID:
1Y4M
Title:
Crystal structure of human endogenous retrovirus HERV-FRD envelope protein (syncitin-2)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HERV-FRD_6p24.1 provirus ancestral Env polyprotein
Gene (Uniprot):ERVFRD-1
Chain IDs:A, B, C
Chain Length:53
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Crystal structure of a pivotal domain of human syncytin-2, a 40 million years old endogenous retrovirus fusogenic envelope gene captured by primates.
J.Mol.Biol. 352 1029 1034 (2005)
PMID: 16140326 DOI: 10.1016/j.jmb.2005.07.058

Abstact

HERV-FRD is a human endogenous retrovirus that entered the human genome 40 million years ago. Its envelope gene, syncytin-2, was diverted by an ancestral host most probably because of its fusogenic property, for a role in placenta morphogenesis. It was maintained in a functional state in all primate branches as a bona fide cellular gene, submitted to a very low mutation rate as compared to infectious retrovirus genomes. The structure of the syncytin-2 protein thus provides a good insight into that of the oldest mammalian retroviral envelope. Here, we report the crystal structure of a central fragment of its "fossil" ectodomain, allowing a remarkable superposition with the structures of the corresponding domains of present-day infectious retroviruses, in spite of a more than 60% divergent sequence. These results suggest the existence of a unique structural solution selected by these proteins for their fusogenic function.

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Primary Citation of related structures