1Y0Z image
Deposition Date 2004-11-16
Release Date 2004-11-30
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1Y0Z
Title:
X-ray structure of gene product from Arabidopsis thaliana At3g21360
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.24
R-Value Work:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:protein product of AT3G21360
Gene (Uniprot):MHC9_4
Chain IDs:A, B
Chain Length:330
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Primary Citation
The structure at 2.4 A resolution of the protein from gene locus At3g21360, a putative Fe(II)/2-oxoglutarate-dependent enzyme from Arabidopsis thaliana.
Acta Crystallogr.,Sect.F 61 469 472 (2005)
PMID: 16511070 DOI: 10.1107/S1744309105011565

Abstact

The crystal structure of the gene product of At3g21360 from Arabidopsis thaliana was determined by the single-wavelength anomalous dispersion method and refined to an R factor of 19.3% (Rfree = 24.1%) at 2.4 A resolution. The crystal structure includes two monomers in the asymmetric unit that differ in the conformation of a flexible domain that spans residues 178-230. The crystal structure confirmed that At3g21360 encodes a protein belonging to the clavaminate synthase-like superfamily of iron(II) and 2-oxoglutarate-dependent enzymes. The metal-binding site was defined and is similar to the iron(II) binding sites found in other members of the superfamily.

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Primary Citation of related structures
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