1Y08 image
Deposition Date 2004-11-15
Release Date 2004-12-21
Last Version Date 2024-05-29
Entry Detail
PDB ID:
1Y08
Keywords:
Title:
Structure of the Streptococcal Endopeptidase IdeS, a Novel Cysteine Proteinase with Strict Specificity for IgG
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.93 Å
R-Value Free:
0.23
R-Value Work:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:hypothetical protein SPy0861
Gene (Uniprot):sib38
Mutations:C94S
Chain IDs:A
Chain Length:323
Number of Molecules:1
Biological Source:Streptococcus pyogenes
Ligand Molecules
Primary Citation
Structure of the streptococcal endopeptidase IdeS, a cysteine proteinase with strict specificity for IgG
Proc.Natl.Acad.Sci.Usa 101 17371 17376 (2004)
PMID: 15574492 DOI: 10.1073/pnas.0407965101

Abstact

Pathogenic bacteria have developed complex and diverse virulence mechanisms that weaken or disable the host immune defense system. IdeS (IgG-degrading enzyme of Streptococcus pyogenes) is a secreted cysteine endopeptidase from the human pathogen S. pyogenes with an extraordinarily high degree of substrate specificity, catalyzing a single proteolytic cleavage at the lower hinge of human IgG. This proteolytic degradation promotes inhibition of opsonophagocytosis and interferes with the killing of group A Streptococcus. We have determined the crystal structure of the catalytically inactive mutant IdeS-C94S by x-ray crystallography at 1.9-A resolution. Despite negligible sequence homology to known proteinases, the core of the structure resembles the canonical papain fold although with major insertions and a distinct substrate-binding site. Therefore IdeS belongs to a unique family within the CA clan of cysteine proteinases. Based on analogy with inhibitor complexes of papain-like proteinases, we propose a model for substrate binding by IdeS.

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