1XXZ image
Deposition Date 2004-11-09
Release Date 2005-02-15
Last Version Date 2022-03-02
Entry Detail
PDB ID:
1XXZ
Title:
Solution structure of sst1-selective somatostatin (SRIF) analog
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
20
Conformers Submitted:
10
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SST1-selective somatosatin (analog 5)
Chain IDs:A
Chain Length:11
Number of Molecules:1
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
DTR A TRP D-TRYPTOPHAN
IAM A ALA 4-[(ISOPROPYLAMINO)METHYL]PHENYLALANINE
IYR A TYR 3-IODO-TYROSINE
Ligand Molecules
Primary Citation
Somatostatin receptor 1 selective analogues: 4. Three-dimensional consensus structure by NMR
J.Med.Chem. 48 523 533 (2005)
PMID: 15658866 DOI: 10.1021/jm049518u

Abstact

The three-dimensional NMR structures of six analogues of somatostatin (SRIF) are described. These analogues with the amino acid 4-(N-isopropyl)-aminomethylphenylalanine (IAmp) at position 9 exhibit potent and highly selective binding to human SRIF subtype 1 receptors (sst(1)). The conformations reveal that the backbones of these analogues have a hairpin-like structure similar to the sst(2)-subtype-selective analogues. This structure serves as a scaffold for retaining a unique arrangement of the side chains of d-Trp(8), IAmp(9), Phe(7), and Phe(11) or m-I-Tyr(11) (m-I-Tyr = mono-iodo-tyrosine). The conformational preferences and results from biological analyses of these analogues(1,2) allow a detailed study of the structure-activity relationship of SRIF. The proposed consensus pharmacophore of the sst(1)-selective analogues requires a unique set of distances between an indole/2-naphthyl ring, an IAmp side chain, and two aromatic rings. This motif is necessary and sufficient to explain the binding affinities of all of the analogues studied and is distinct from the existing models suggested for sst(4) as well as sst(2)/sst(5) selectivity.

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Primary Citation of related structures