1XTL image
Deposition Date 2004-10-22
Release Date 2005-10-04
Last Version Date 2024-10-23
Entry Detail
PDB ID:
1XTL
Title:
Crystal structure of P104H mutant of SOD-like protein from Bacillus subtilis.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hypothetical superoxide dismutase-like protein yojM
Gene (Uniprot):yojM
Mutagens:P83H
Chain IDs:A (auth: B), B (auth: A), C, D
Chain Length:175
Number of Molecules:4
Biological Source:Bacillus subtilis
Primary Citation
From an Inactive Prokaryotic SOD Homologue to an Active Protein through Site-Directed Mutagenesis.
J.Am.Chem.Soc. 127 13287 13292 (2005)
PMID: 16173759 DOI: 10.1021/ja052790o

Abstact

It is known that several prokaryotic protein sequences, characterized by high homology with the eukaryotic Cu,ZnSODs, lack some of the metal ligands. In the present work, we have stepwise reintroduced the two missing copper ligands in the SOD-like protein of Bacillus subtilis, through site-directed mutagenesis. The mutant with three out of the four His that bind copper is not active, whereas the fully reconstituted mutant displays an activity of about 10% that of human Cu,ZnSOD. The mutated proteins have been characterized in solution and in the solid state. In solution, the proteins experience conformational disorder, which is believed to be partly responsible for the decreased enzymatic activity and sheds light on the tendency of several human SOD mutants to introduce mobility in the protein frame. In the crystal, on the contrary, the protein has a well-defined conformation, giving rise to dimers through the coordination of an exogenous zinc ion. The catalytic properties of the double mutant, which might be regarded as a step in an artificial evolution from a nonactive SOD to a fully functioning enzyme, are discussed on the basis of the structural and dynamical properties.

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