1XIW image
Deposition Date 2004-09-22
Release Date 2004-11-16
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1XIW
Title:
Crystal structure of human CD3-e/d dimer in complex with a UCHT1 single-chain antibody fragment
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD3 epsilon chain
Gene (Uniprot):CD3E
Chain IDs:A, E
Chain Length:105
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD3 delta chain
Gene (Uniprot):CD3D
Chain IDs:B, F
Chain Length:79
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:immunoglobulin light chain variable region
Chain IDs:C, G
Chain Length:108
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:immunoglobulin heavy chain variable region
Chain IDs:D, H
Chain Length:122
Number of Molecules:2
Biological Source:Mus musculus
Primary Citation
Crystal structure of a human CD3-epsilon/delta dimer in complex with a UCHT1 single-chain antibody fragment.
Proc.Natl.Acad.Sci.USA 101 16268 16273 (2004)
PMID: 15534202 DOI: 10.1073/pnas.0407359101

Abstact

The alpha/beta T cell receptor complex transmits signals from MHC/peptide antigens through a set of constitutively associated signaling molecules, including CD3-epsilon/gamma and CD3-epsilon/delta. We report the crystal structure at 1.9-A resolution of a complex between a human CD3-epsilon/delta ectodomain heterodimer and a single-chain fragment of the UCHT1 antibody. CD3-epsilon/delta and CD3-epsilon/gamma share a conserved interface between the Ig-fold ectodomains, with parallel packing of the two G strands. CD3-delta has a more electronegative surface and a more compact Ig fold than CD3-gamma; thus, the two CD3 heterodimers have distinctly different molecular surfaces. The UCHT1 antibody binds near an acidic region of CD3-epsilon opposite the dimer interface, occluding this region from direct interaction with the TCR. This immunodominant epitope may be a uniquely accessible surface in the TCR/CD3 complex, because there is overlap between the binding site of the UCHT1 and OKT3 antibodies. Determination of the CD3-epsilon/delta structure completes the set of TCR/CD3 globular ectodomains and contributes information about exposed CD3 surfaces.

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