1XFV image
Deposition Date 2004-09-15
Release Date 2005-05-03
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1XFV
Title:
Crystal structure of anthrax edema factor (EF) in complex with calmodulin and 3' deoxy-ATP
Biological Source:
Source Organism:
Bacillus anthracis (Taxon ID: 1392)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.35 Å
R-Value Free:
0.28
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Calmodulin-sensitive adenylate cyclase
Gene (Uniprot):cya
Chain IDs:A, B, C, D, E, F
Chain Length:777
Number of Molecules:6
Biological Source:Bacillus anthracis
Polymer Type:polypeptide(L)
Molecule:Calmodulin 2
Chain IDs:G (auth: O), H (auth: P), I (auth: Q), J (auth: R), K (auth: S), L (auth: T)
Chain Length:149
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
Calcium-independent calmodulin binding and two-metal-ion catalytic mechanism of anthrax edema factor.
EMBO J. 24 929 941 (2005)
PMID: 15719022 DOI: 10.1038/sj.emboj.7600574

Abstact

Edema factor (EF), a key anthrax exotoxin, has an anthrax protective antigen-binding domain (PABD) and a calmodulin (CaM)-activated adenylyl cyclase domain. Here, we report the crystal structures of CaM-bound EF, revealing the architecture of EF PABD. CaM has N- and C-terminal domains and each domain can bind two calcium ions. Calcium binding induces the conformational change of CaM from closed to open. Structures of the EF-CaM complex show how EF locks the N-terminal domain of CaM into a closed conformation regardless of its calcium-loading state. This represents a mechanism of how CaM effector alters the calcium affinity of CaM and uncouples the conformational change of CaM from calcium loading. Furthermore, structures of EF-CaM complexed with nucleotides show that EF uses two-metal-ion catalysis, a prevalent mechanism in DNA and RNA polymerases. A histidine (H351) further facilitates the catalysis of EF by activating a water to deprotonate 3'OH of ATP. Mammalian adenylyl cyclases share no structural similarity with EF and they also use two-metal-ion catalysis, suggesting the catalytic mechanism-driven convergent evolution of two structurally diverse adenylyl cyclases.

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