1XFT image
Deposition Date 2004-09-15
Release Date 2005-04-05
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1XFT
Keywords:
Title:
Synchrotron X-ray Powder Diffraction Study of Hexagonal Turkey Egg-white Lysozyme
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.35 Å
R-Value Work:
0.11
R-Value Observed:
0.11
Space Group:
P 61 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lysozyme C
Gene (Uniprot):LYZ
Chain IDs:A
Chain Length:129
Number of Molecules:1
Biological Source:Meleagris gallopavo
Ligand Molecules
Primary Citation
Synchrotron X-ray powder diffraction study of hexagonal turkey egg-white lysozyme.
Acta Crystallogr.,Sect.D 61 423 432 (2005)
PMID: 15805597 DOI: 10.1107/S0907444905001393

Abstact

The structure of turkey egg-white lysozyme (TEWL) has been refined from high-resolution X-ray powder diffraction data. The sample was rapidly obtained as a polycrystalline precipitate at high protein concentration using 0.5 M NaCl solvent pH 6 and was deposited in the PDB with code 1xft. The diffraction data were collected at room temperature. Molecular replacement was shown to give a suitable starting point for refinement, illustrating that powder data can be sufficient for this approach. Crystallographic models were then refined by combined Rietveld and stereochemical restraint analysis of the powder data (d(min) = 3.35 A), resulting in the extraction of reliable lattice parameters and the refinement of the molecular conformation at room temperature. The structure is hexagonal [space group P6(1)22, unit-cell parameters a = 71.0862 (3), c = 85.0276 (5) A] with 12 symmetry-related molecules in the unit cell, in agreement with previous studies. The results of our analysis are indicative of specific amino acids being disordered at this temperature. Upon cooling, a sudden drop in the lattice parameters at approximately 250 K is observed concurrently with the freezing of the mother liquor. The observation of severe peak broadening below this temperature indicates strain effects accompanying the freezing transition, which are found to be reversible. Finally, a correlation between the unit-cell parameters and the pH of the buffer solution is evident, in a similar manner to earlier observations on HEWL.

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