1XF1 image
Deposition Date 2004-09-13
Release Date 2005-11-22
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1XF1
Keywords:
Title:
Structure of C5a peptidase- a key virulence factor from Streptococcus
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.26
R-Value Work:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:C5a peptidase
Gene (Uniprot):scpA
Chain IDs:A, B
Chain Length:926
Number of Molecules:2
Biological Source:Streptococcus pyogenes
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Structure of the streptococcal cell wall C5a peptidase
Proc.Natl.Acad.Sci.Usa 102 18391 18396 (2005)
PMID: 16344483 DOI: 10.1073/pnas.0504954102

Abstact

The structure of a cell surface enzyme from a gram-positive pathogen has been determined to 2-A resolution. Gram-positive pathogens have a thick cell wall to which proteins and carbohydrate are covalently attached. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. Structural analysis of a 949-residue fragment of the [D130A,S512A] mutant of SCP from group B Streptococcus (S. agalactiae, SCPB) revealed SCPB is composed of five distinct domains. The N-terminal subtilisin-like protease domain has a 134-residue protease-associated domain inserted into a loop between two beta-strands. This domain also contains one of two Arg-Gly-Asp (RGD) sequences found in SCPB. At the C terminus are three fibronectin type III (Fn) domains. The second RGD sequence is located between Fn1 and Fn2. Our analysis suggests that SCP binding to integrins by the RGD motifs may stabilize conformational changes required for substrate binding.

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Primary Citation of related structures