1XEF image
Deposition Date 2004-09-10
Release Date 2005-06-07
Last Version Date 2023-10-25
Entry Detail
PDB ID:
1XEF
Title:
Crystal structure of the ATP/Mg2+ bound composite dimer of HlyB-NBD
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha-hemolysin translocation ATP-binding protein hlyB
Gene (Uniprot):hlyB
Mutagens:H662A
Chain IDs:A, B, C, D
Chain Length:241
Number of Molecules:4
Biological Source:Escherichia coli
Primary Citation
H662 is the linchpin of ATP hydrolysis in the nucleotide-binding domain of the ABC transporter HlyB
Embo J. 24 1901 1910 (2005)
PMID: 15889153 DOI: 10.1038/sj.emboj.7600657

Abstact

The ABC transporter HlyB is a central element of the HlyA secretion machinery, a paradigm of Type I secretion. Here, we describe the crystal structure of the HlyB-NBD (nucleotide-binding domain) with H662 replaced by Ala in complex with ATP/Mg2+. The dimer shows a composite architecture, in which two intact ATP molecules are bound at the interface of the Walker A motif and the C-loop, provided by the two monomers. ATPase measurements confirm that H662 is essential for activity. Based on these data, we propose a model in which E631 and H662, highly conserved among ABC transporters, form a catalytic dyad. Here, H662 acts as a 'linchpin', holding together all required parts of a complicated network of interactions between ATP, water molecules, Mg2+, and amino acids both in cis and trans, necessary for intermonomer communication. Based on biochemical experiments, we discuss the hypothesis that substrate-assisted catalysis, rather than general base catalysis might operate in ABC-ATPases.

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