1XDT image
Deposition Date 1997-11-18
Release Date 1998-02-25
Last Version Date 2024-10-23
Entry Detail
PDB ID:
1XDT
Title:
COMPLEX OF DIPHTHERIA TOXIN AND HEPARIN-BINDING EPIDERMAL GROWTH FACTOR
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.29
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HEPARIN-BINDING EPIDERMAL GROWTH FACTOR
Gene (Uniprot):HBEGF
Chain IDs:B (auth: R)
Chain Length:79
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:DIPHTHERIA TOXIN
Chain IDs:A (auth: T)
Chain Length:535
Number of Molecules:1
Biological Source:Corynebacterium diphtheriae
Primary Citation
Crystal structure of the complex of diphtheria toxin with an extracellular fragment of its receptor.
Mol.Cell 1 67 78 (1997)
PMID: 9659904 DOI: 10.1016/S1097-2765(00)80008-8

Abstact

We describe the crystal structure at 2.65 A resolution of diphtheria toxin (DT) complexed 1:1 with a fragment of its cell-surface receptor, the precursor of heparin-binding epidermal-growth-factor-like growth factor (HBEGF). HBEGF in the complex has the typical EGF-like fold and packs its principal beta hairpin against the face of a beta sheet in the receptor-binding domain of DT. The interface has a predominantly hydrophobic core, and polar interactions are formed at the periphery. The structure of the complex suggests that part of the membrane anchor of the receptor can interact with a hinge region of DT. The toxin molecule is thereby induced to form an open conformation conducive to membrane insertion. The structure provides a basis for altering the binding specificity of the toxin, and may also serve as a model for other EGF-receptor interactions.

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