1XCV image
Deposition Date 2004-09-03
Release Date 2005-08-16
Last Version Date 2023-08-23
Entry Detail
PDB ID:
1XCV
Title:
Crystal Structure Of (H79AC102D)Dtxr complexed with Nickel(II)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.3
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Diphtheria toxin repressor mutant
Mutagens:H79A, C102D
Chain IDs:A
Chain Length:139
Number of Molecules:1
Biological Source:Corynebacterium diphtheriae
Ligand Molecules
Primary Citation
Mechanism of metal ion activation of the diphtheria toxin repressor DtxR.
Proc.Natl.Acad.Sci.USA 102 18408 18413 (2005)
PMID: 16352732 DOI: 10.1073/pnas.0500908102

Abstact

The diphtheria toxin repressor (DtxR) is a metal ion-activated transcriptional regulator that has been linked to the virulence of Corynebacterium diphtheriae. Structure determination has shown that there are two metal ion binding sites per repressor monomer, and site-directed mutagenesis has demonstrated that binding site 2 (primary) is essential for recognition of the target DNA repressor, leaving the role of binding site 1 (ancillary) unclear. Calorimetric techniques have demonstrated that although binding site 1 (ancillary) has high affinity for metal ion with a binding constant of 2 x 10(-7), binding site 2 (primary) is a low-affinity binding site with a binding constant of 6.3 x 10(-4). These two binding sites act in an independent fashion, and their contribution can be easily dissected by traditional mutational analysis. Our results clearly demonstrate that binding site 1 (ancillary) is the first one to be occupied during metal ion activation, playing a critical role in stabilization of the repressor. In addition, structural data obtained for the mutants Ni-DtxR(H79A,C102D), reported here, and the previously reported DtxR(H79A) have allowed us to propose a mechanism of metal activation for DtxR.

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Primary Citation of related structures