1XB9 image
Deposition Date 2004-08-30
Release Date 2004-12-21
Last Version Date 2023-08-23
Entry Detail
PDB ID:
1XB9
Keywords:
Title:
The structure and function of Xenopus NO38-core, a histone chaperone in the nucleolus
Biological Source:
Source Organism:
Xenopus laevis (Taxon ID: 8355)
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nucleophosmin
Gene (Uniprot):npm1
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:114
Number of Molecules:10
Biological Source:Xenopus laevis
Primary Citation
The Structure and Function of Xenopus NO38-Core, a Histone Chaperone in the Nucleolus.
Structure 12 2149 2160 (2004)
PMID: 15576029 DOI: 10.1016/j.str.2004.09.017

Abstact

Xenopus NO38 is an abundant nucleolar chaperone and a member of the nucleoplasmin (Np) family. Here, we report high-resolution crystal structures of the N-terminal domain of NO38, as a pentamer and a decamer. As expected, NO38 shares the Np family fold. In addition, NO38- and Np-core pentamers each use highly conserved residues and numerous waters to form their respective decamers. Further studies show that NO38 and Np each bind equal amounts of the four core histones. However, NO38 prefers the (H3-H4)(2) tetramer, while Np probably prefers H2A-H2B dimers. We also show that NO38 and Np will each bind noncognate histones when the preferred partner is absent. We suggest that these chaperones must form decamers in order to bind histones and differentiate between histone tetramers and dimers. When taken together, these data imply that NO38 may function as a histone chaperone in the nucleolus.

Legend

Protein

Chemical

Disease

Primary Citation of related structures