1X93 image
Deposition Date 2004-08-19
Release Date 2005-03-22
Last Version Date 2024-05-01
Entry Detail
PDB ID:
1X93
Keywords:
Title:
NMR Structure of Helicobacter pylori HP0222
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
80
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:hypothetical protein HP0222
Gene (Uniprot):HP_0222
Chain IDs:A, B
Chain Length:55
Number of Molecules:2
Biological Source:Helicobacter pylori
Ligand Molecules
Primary Citation
Helicobacter pylori protein HP0222 belongs to Arc/MetJ family of transcriptional regulators.
Proteins 59 303 311 (2005)
PMID: 15723352 DOI: 10.1002/prot.20406

Abstact

Helicobacter pylori is a widespread human bacterial pathogen responsible for inducing gastric and duodenal ulcers and gastric cancers. To date, only 16 protein structures from this organism have been determined, and more than 30% of its 1500 protein functions remain unknown. We report the biochemical characterization, the tertiary structure determined by solution nuclear magnetic resonance (NMR) methods and the putative function of the previously uncharacterized protein HP0222 (JHP0208) from H. pylori. Recombinant HP0222 behaves as a dimer in crosslinking and size exclusion chromatography experiments. The structure consists of a ribbon-helix-helix fold characteristic of transcription factors of the Arc/MetJ family, which all bind DNA as higher order oligomers. Electrophoretic mobility shift assays reveal that HP0222 binds to double-stranded DNA. Previous studies have shown significant increases in transcription levels of HP0222 in response to acid shock and adherence to gastric epithelial cells. To assess possible involvement of HP0222 in acid resistance, we constructed and assayed an H. pylori HP0222 null mutant. We propose that HP0222 is a novel transcriptional regulator in H. pylori.

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Primary Citation of related structures