1X03 image
Deposition Date 2005-03-14
Release Date 2006-05-02
Last Version Date 2024-10-09
Entry Detail
PDB ID:
1X03
Keywords:
Title:
Crystal structure of endophilin BAR domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
I 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SH3-containing GRB2-like protein 2
Gene (Uniprot):SH3GL2
Chain IDs:A
Chain Length:252
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Ligand Molecules
Primary Citation
Endophilin BAR domain drives membrane curvature by two newly identified structure-based mechanisms
Embo J. 25 2889 2897 (2006)
PMID: 16763557 DOI: 10.1038/sj.emboj.7601176

Abstact

The crescent-shaped BAR (Bin/Amphiphysin/Rvs-homology) domain dimer is a versatile protein module that senses and generates positive membrane curvature. The BAR domain dimer of human endophilin-A1, solved at 3.1 A, has a unique structure consisting of a pair of helix-loop appendages sprouting out from the crescent. The appendage's short helices form a hydrophobic ridge, which runs across the concave surface at its center. Examining liposome binding and tubulation in vitro using purified BAR domain and its mutants indicated that the ridge penetrates into the membrane bilayer and enhances liposome tubulation. BAR domain-expressing cells exhibited marked plasma membrane tubulation in vivo. Furthermore, a swinging-arm mutant lost liposome tubulation activity yet retaining liposome binding. These data suggested that the rigid crescent dimer shape is crucial for the tubulation. We here propose that the BAR domain drives membrane curvature by coordinate action of the crescent's scaffold mechanism and the ridge's membrane insertion in addition to membrane binding via amino-terminal amphipathic helix.

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Primary Citation of related structures