1WUL image
Deposition Date 2004-12-07
Release Date 2005-12-07
Last Version Date 2024-11-06
Entry Detail
PDB ID:
1WUL
Keywords:
Title:
High Resolution Structure Of The Reduced State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.16
R-Value Work:
0.11
R-Value Observed:
0.12
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Periplasmic [NiFe] hydrogenase large subunit
Gene (Uniprot):hydB
Chain IDs:B (auth: L)
Chain Length:534
Number of Molecules:1
Biological Source:Desulfovibrio vulgaris str. 'Miyazaki F'
Polymer Type:polypeptide(L)
Molecule:Periplasmic [NiFe] hydrogenase small subunit
Gene (Uniprot):hydA
Chain IDs:A (auth: S)
Chain Length:267
Number of Molecules:1
Biological Source:Desulfovibrio vulgaris str. 'Miyazaki F'
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSO B CYS S-HYDROXYCYSTEINE
Primary Citation
Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure 13 1635 1642 (2005)
PMID: 16271886 DOI: 10.1016/j.str.2005.07.018

Abstact

Hydrogenases catalyze oxidoreduction of molecular hydrogen and have potential applications for utilizing dihydrogen as an energy source. [NiFe] hydrogenase has two different oxidized states, Ni-A (unready, exhibits a lag phase in reductive activation) and Ni-B (ready). We have succeeded in converting Ni-B to Ni-A with the use of Na2S and O2 and determining the high-resolution crystal structures of both states. Ni-B possesses a monatomic nonprotein bridging ligand at the Ni-Fe active site, whereas Ni-A has a diatomic species. The terminal atom of the bridging species of Ni-A occupies a similar position as C of the exogenous CO in the CO complex (inhibited state). The common features of the enzyme structures at the unready (Ni-A) and inhibited (CO complex) states are proposed. These findings provide useful information on the design of new systems of biomimetic dihydrogen production and fuel cell devices.

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