1WN8 image
Deposition Date 2004-07-28
Release Date 2004-09-14
Last Version Date 2024-05-29
Entry Detail
PDB ID:
1WN8
Keywords:
Title:
NMR Structure of OaNTR
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Kalata B3/B6
Gene (Uniprot):OAK2
Chain IDs:A
Chain Length:22
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
Conserved structural and sequence elements implicated in the processing of gene-encoded circular proteins
J.Biol.Chem. 279 46858 46867 (2004)
PMID: 15328347 DOI: 10.1074/jbc.M407421200

Abstact

The cyclotides are the largest family of naturally occurring circular proteins. The mechanism by which the termini of these gene-encoded proteins are linked seamlessly with a peptide bond to form a circular backbone is unknown. Here we report cyclotide-encoding cDNA sequences from the plant Viola odorata and compare them with those from an evolutionarily distinct species, Oldenlandia affinis. Individual members of this multigene family encode one to three mature cyclotide domains. These domains are preceded by N-terminal repeat regions (NTRs) that are conserved within a plant species but not between species. We have structurally characterized peptides corresponding to these NTRs and show that, despite them having no sequence homology, they form a structurally conserved alpha-helical motif. This structural conservation suggests a vital role for the NTR in the in vivo folding, processing, or detoxification of cyclotide domains from the precursor protein.

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