1WLI image
Deposition Date 2004-06-28
Release Date 2005-07-19
Last Version Date 2023-10-25
Entry Detail
PDB ID:
1WLI
Title:
L122Y mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:FMN-binding protein
Gene (Uniprot):DvMF_2023
Mutations:L122Y
Chain IDs:A, B
Chain Length:122
Number of Molecules:2
Biological Source:Desulfovibrio vulgaris str. 'Miyazaki F'
Ligand Molecules
Primary Citation
Determination of the role of the Carboxyl-terminal leucine-122 in FMN-binding protein by mutational and structural analysis.
J.Biochem. 141 459 468 (2007)
PMID: 17261542 DOI: 10.1093/jb/mvm051

Abstact

Mutants of flavin mononucleotide-binding protein (FMN-bp) were made by site-directed mutagenesis to investigate the role of carboxyl-terminal Leu122 of the pairing subunit in controlling redox potentials, binding the prosthetic group, and forming the tertiary and quaternary structure. We compared the oxidation-reduction potentials, FMN-binding properties, and higher structures of wild-type FMN-bp and four mutant proteins (L122Y, L122E, L122K and L122-deleted). We found that the redox potentials were affected by mutations. Also, the affinities of L122E, L122K and L122 deletion mutant apoproteins for FMN were lower than for the wild-type apoprotein, whereas the affinity of L122Y for FMN was increased. Analytical ultracentrifugation showed that the dissociation constants for dimerization of L122E and L122K were larger than for wild-type FMN-bp, whereas the dissociation constants for L122Y and the deletion mutant were lower than for the wild type. Finally, we determined the higher structures of L122Y, L122E and L122K mutants by X-ray crystallography. Our results show that the mutation of Leu122 in FMN-bp changes midpoint potentials, dissociation constants for FMN, and dimer formation, indicating that this residue is important in the pairing subunit.

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Primary Citation of related structures