ISDA

Deposition Date 2004-05-28

Release Date 2004-11-28

Last Version Date 2024-05-29

Entry Detail

PDB ID:

1WID

Keywords:

DNA BINDING PROTEIN

Title:

Solution Structure of the B3 DNA-Binding Domain of RAV1

Biological Source:

Source Organism:

Arabidopsis thaliana (Taxon ID: 3702)

Method Details:

Experimental Method:

SOLUTION NMR

Conformers Calculated:

Conformers Submitted:

Selection Criteria:

structures with the lowest energy

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-binding protein RAV1
Gene (Uniprot):RAV1
Chain IDs:A
Chain Length:130
Number of Molecules:1
Biological Source:Arabidopsis thaliana

UniProt ID:Q9ZWM9 Pfam ID:PF02362

Ligand Molecules

Primary Citation

Solution Structure of the B3 DNA Binding Domain of the Arabidopsis Cold-Responsive Transcription Factor RAV1

Yamasaki, K, Kigawa, T, Inoue, M, Tateno, M, Yamasaki, T, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Tomo, Y, Hayami, N, Terada, T, Shirouzu, M, Osanai, T, Tanaka, A, Seki, M, Shinozaki, K, Yokoyama, S.Show

Plant Cell 16 3448 3459 (2004)

PMID: 15548737 DOI: 10.1105/tpc.104.026112

Abstact

The B3 DNA binding domain is shared amongst various plant-specific transcription factors, including factors involved in auxin-regulated and abscisic acid-regulated transcription. Herein, we report the NMR solution structure of the B3 domain of the Arabidopsis thaliana cold-responsive transcription factor RAV1. The structure consists of a seven-stranded open beta-barrel and two alpha-helices located at the ends of the barrel and is significantly similar to the structure of the noncatalytic DNA binding domain of the restriction enzyme EcoRII. An NMR titration experiment revealed a DNA recognition interface that enabled us to propose a structural model of the protein-DNA complex. The locations of the DNA-contacting residues are also likely to be similar to those of the EcoRII DNA binding domain.

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Primary Citation of related structures