1W8X image
Entry Detail
PDB ID:
1W8X
Keywords:
Title:
Structural analysis of PRD1
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2004-10-01
Release Date:
2004-11-11
Method Details:
Experimental Method:
Resolution:
4.20 Å
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:MAJOR CAPSID PROTEIN (PROTEIN P3)
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:395
Number of Molecules:12
Biological Source:ENTEROBACTERIA PHAGE PRD1
Polymer Type:polypeptide(L)
Description:PROTEIN P30
Chain IDs:M
Chain Length:83
Number of Molecules:1
Biological Source:ENTEROBACTERIA PHAGE PRD1
Polymer Type:polypeptide(L)
Description:PROTEIN P31
Chain IDs:N
Chain Length:126
Number of Molecules:1
Biological Source:ENTEROBACTERIA PHAGE PRD1
Polymer Type:polypeptide(L)
Description:PROTEIN P16
Chain IDs:O (auth: P)
Chain Length:117
Number of Molecules:1
Biological Source:ENTEROBACTERIA PHAGE PRD1
Ligand Molecules
Primary Citation
Insights Into Assembly from Structural Analysis of Bacteriophage Prd1.
Nature 432 68 ? (2004)
PMID: 15525981 DOI: 10.1038/NATURE03056

Abstact

The structure of the membrane-containing bacteriophage PRD1 has been determined by X-ray crystallography at about 4 A resolution. Here we describe the structure and location of proteins P3, P16, P30 and P31. Different structural proteins seem to have specialist roles in controlling virus assembly. The linearly extended P30 appears to nucleate the formation of the icosahedral facets (composed of trimers of the major capsid protein, P3) and acts as a molecular tape-measure, defining the size of the virus and cementing the facets together. Pentamers of P31 form the vertex base, interlocking with subunits of P3 and interacting with the membrane protein P16. The architectural similarities with adenovirus and one of the largest known virus particles PBCV-1 support the notion that the mechanism of assembly of PRD1 is scaleable and applies across the major viral lineage formed by these viruses.

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Primary Citation of related structures