1W80 image
Deposition Date 2004-09-14
Release Date 2004-10-27
Last Version Date 2023-12-13
Entry Detail
PDB ID:
1W80
Title:
Crystal structure of the alpha-adaptin appendage domain, from the AP2 adaptor complex, bound to 2 peptides from Synaptojanin170
Biological Source:
Source Organism:
MUS MUSCULUS (Taxon ID: 10090)
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ADAPTER-RELATED PROTEIN COMPLEX 2 ALPHA 2 SUBUNIT
Gene (Uniprot):Ap2a2
Chain IDs:A
Chain Length:250
Number of Molecules:1
Biological Source:MUS MUSCULUS
Polymer Type:polypeptide(L)
Molecule:SYNAPTOJANIN 1
Gene (Uniprot):SYNJ1
Chain IDs:B (auth: P)
Chain Length:12
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:SYNAPTOJANIN 1
Gene (Uniprot):SYNJ1
Chain IDs:C (auth: Q)
Chain Length:12
Number of Molecules:1
Biological Source:HOMO SAPIENS
Primary Citation
Evolving Nature of the Ap2 Alpha-Appendage Hub During Clathrin-Coated Vesicle Endocytosis.
Embo J. 23 4371 ? (2004)
PMID: 15496985 DOI: 10.1038/SJ.EMBOJ.7600445

Abstact

Clathrin-mediated endocytosis involves the assembly of a network of proteins that select cargo, modify membrane shape and drive invagination, vesicle scission and uncoating. This network is initially assembled around adaptor protein (AP) appendage domains, which are protein interaction hubs. Using crystallography, we show that FxDxF and WVxF peptide motifs from synaptojanin bind to distinct subdomains on alpha-appendages, called 'top' and 'side' sites. Appendages use both these sites to interact with their binding partners in vitro and in vivo. Occupation of both sites simultaneously results in high-affinity reversible interactions with lone appendages (e.g. eps15 and epsin1). Proteins with multiple copies of only one type of motif bind multiple appendages and so will aid adaptor clustering. These clustered alpha(appendage)-hubs have altered properties where they can sample many different binding partners, which in turn can interact with each other and indirectly with clathrin. In the final coated vesicle, most appendage binding partners are absent and thus the functional status of the appendage domain as an interaction hub is temporal and transitory giving directionality to vesicle assembly.

Legend

Protein

Chemical

Disease

Primary Citation of related structures