1W63 image
Deposition Date 2004-08-12
Release Date 2004-09-21
Last Version Date 2023-12-13
Entry Detail
PDB ID:
1W63
Keywords:
Title:
AP1 clathrin adaptor core
Biological Source:
Source Organism:
MUS MUSCULUS (Taxon ID: 10090)
RATTUS NORVEGICUS (Taxon ID: 10116)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.00 Å
R-Value Free:
0.30
R-Value Work:
0.29
R-Value Observed:
0.29
Space Group:
P 32 1 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA 1 SUBUNIT
Gene (Uniprot):Ap1g1
Chain IDs:A, C, E, G, I, K
Chain Length:618
Number of Molecules:6
Biological Source:MUS MUSCULUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBUNIT
Gene (Uniprot):Ap1b1
Chain IDs:B, D, F, H, J, L
Chain Length:584
Number of Molecules:6
Biological Source:RATTUS NORVEGICUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ADAPTOR-RELATED PROTEIN COMPLEX 1, MU 1 SUBUNIT
Gene (Uniprot):Ap1m1
Chain IDs:M, N, O, P, R, V
Chain Length:423
Number of Molecules:6
Biological Source:MUS MUSCULUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ADAPTER-RELATED PROTEIN COMPLEX 1 SIGMA 1A SUBUNIT
Gene (Uniprot):Ap1s1
Chain IDs:Q, S, T, U, W, X
Chain Length:158
Number of Molecules:6
Biological Source:MUS MUSCULUS
Ligand Molecules
Primary Citation
Crystal Structure of the Clathrin Adaptor Protein 1 Core
Proc.Natl.Acad.Sci.USA 101 14108 ? (2004)
PMID: 15377783 DOI: 10.1073/PNAS.0406102101

Abstact

The heterotetrameric adaptor proteins (AP complexes) link the outer lattice of clathrin-coated vesicles with membrane-anchored cargo molecules. We report the crystal structure of the core of the AP-1 complex, which functions in the trans-Golgi network (TGN). Packing of complexes in the crystal generates an exceptionally long (1,135-A) unit-cell axis, but the 6-fold noncrystallographic redundancy yields an excellent map at 4-A resolution. The AP-1 core comprises N-terminal fragments of the two large chains, beta1 and gamma, and the intact medium and small chains, micro1 and sigma1. Its molecular architecture closely resembles that of the core of AP-2, the plasma-membrane-specific adaptor, for which a structure has been determined. Both structures represent an "inactive" conformation with respect to binding of cargo with a tyrosine-based sorting signal. TGN localization of AP-1 depends on the small GTPase, Arf1, and the phosphoinositide, PI-4-P. We show that directed mutations of residues at a particular corner of the gamma chain prevent recruitment to the TGN in cells and diminish PI-4-P-dependent, but not Arf1-dependent, liposome binding in vitro.

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Primary Citation of related structures