1W3B image
Deposition Date 2004-07-14
Release Date 2004-09-09
Last Version Date 2024-05-08
Entry Detail
PDB ID:
1W3B
Keywords:
Title:
The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110
Gene (Uniprot):OGT
Chain IDs:A, B
Chain Length:388
Number of Molecules:2
Biological Source:HOMO SAPIENS
Ligand Molecules
Primary Citation
The Superhelical Tpr-Repeat Domain of O-Linked Glcnac Transferase Exhibits Structural Similarities to Importin Alpha
Nat.Struct.Mol.Biol. 11 1001 ? (2004)
PMID: 15361863 DOI: 10.1038/NSMB833

Abstact

Addition of N-acetylglucosamine (GlcNAc) is a ubiquitous form of intracellular glycosylation catalyzed by the conserved O-linked GlcNAc transferase (OGT). OGT contains an N-terminal domain of tetratricopeptide (TPR) repeats that mediates the recognition of a broad range of target proteins. Components of the nuclear pore complex are major OGT targets, as OGT depletion by RNA interference (RNAi) results in the loss of GlcNAc modification at the nuclear envelope. To gain insight into the mechanism of target recognition, we solved the crystal structure of the homodimeric TPR domain of human OGT, which contains 11.5 TPR repeats. The repeats form an elongated superhelix. The concave surface of the superhelix is lined by absolutely conserved asparagines, in a manner reminiscent of the peptide-binding site of importin alpha. Based on this structural similarity, we propose that OGT uses an analogous molecular mechanism to recognize its targets.

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Primary Citation of related structures