1VYX image
Deposition Date 2004-05-07
Release Date 2004-10-01
Last Version Date 2024-05-15
Entry Detail
PDB ID:
1VYX
Title:
Solution structure of the KSHV K3 N-terminal domain
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
30
Conformers Submitted:
28
Selection Criteria:
NO VIOLATIONS GREATER THAN 0.25A, NO ANGLE VIOLATIONS
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ORF K3
Gene (Uniprot):K3
Chain IDs:A
Chain Length:60
Number of Molecules:1
Biological Source:HUMAN HERPESVIRUS 8
Ligand Molecules
Primary Citation
Solution Structure of the Kaposi'S Sarcoma-Associated Herpesvirus K3 N-Terminal Domain Reveals a Novel E2-Binding C4Hc3-Type Ring Domain
J.Biol.Chem. 279 53840 ? (2004)
PMID: 15465811 DOI: 10.1074/JBC.M409662200

Abstact

RING domains are found in a large number of eukaryotic proteins. Most function as E3 ubiquitin-protein ligases, catalyzing the terminal step in the ubiquitination process. Structurally, these domains have been characterized as binding two zinc ions in a stable cross-brace motif. The tumorigenic human gamma-herpesvirus Kaposi's sarcoma-associated herpesvirus encodes a ubiquitin-protein ligase termed K3, which functions as an immune evasion molecule by ubiquitinating major histocompatibility complex class I. K3 possesses at its N terminus a domain related to cellular RING domains but with an altered zinc ligand arrangement. This domain was initially characterized as a plant homeodomain, a structure not previously known to function as an E3. Here, it is conclusively demonstrated that the K3 N-terminal domain is a variant member of the RING domain family and not a plant homeodomain. The domain is found to interact with the cellular ubiquitin-conjugating enzymes UbcH5A to -C and UbcH13, which dock to the equivalent surface as on classical cellular RING domains. Interaction with UbcH13 suggests a possible role for K3 in catalyzing Lys(63)-linked ubiquitination.

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Primary Citation of related structures