1VTL image
Deposition Date 1993-12-17
Release Date 2011-07-13
Last Version Date 2023-12-27
Entry Detail
PDB ID:
1VTL
Title:
CO-CRYSTAL STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF A TATA ELEMENT
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TATA BINDING PROTEIN (TBP)
Gene (Uniprot):TBP1
Chain IDs:E, F
Chain Length:186
Number of Molecules:2
Biological Source:ARABIDOPSIS THALIANA
Ligand Molecules
Primary Citation
Co-Crystal Structure of TBP Recognizing the Minor Groove of a TATA Element
Nature 365 520 527 (1993)
PMID: 8413605 DOI: 10.1038/365520a0

Abstact

The three-dimensional structure of a TATA-box binding polypeptide complexed with the TATA element of the adenovirus major late promoter has been determined by X-ray crystallography at 2.25 A resolution. Binding of the saddle-shaped protein induces a conformational change in the DNA, inducing sharp kinks at either end of the sequence TATAAAAG. Between the kinks, the right-handed double helix is smoothly curved and partially unwound, presenting a widened minor groove to TBP's concave, antiparallel beta-sheet. Side-chain/base interactions are restricted to the minor groove, and include hydrogen bonds, van der Waals contacts and phenylalanine-base stacking interactions.

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Primary Citation of related structures