1VL9 image
Deposition Date 2004-07-15
Release Date 2004-10-19
Last Version Date 2024-11-13
Entry Detail
PDB ID:
1VL9
Keywords:
Title:
Atomic resolution (0.97A) structure of the triple mutant (K53,56,121M) of bovine pancreatic phospholipase A2
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Host Organism:
Method Details:
Experimental Method:
Resolution:
0.97 Å
R-Value Free:
0.13
R-Value Work:
0.10
R-Value Observed:
0.11
Space Group:
P 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phospholipase A2
Gene (Uniprot):PLA2G1B
Mutagens:K53M, K56M, K121M
Chain IDs:A
Chain Length:123
Number of Molecules:1
Biological Source:Bos taurus
Primary Citation
Atomic resolution (0.97 A) structure of the triple mutant (K53,56,121M) of bovine pancreatic phospholipase A2.
Acta Crystallogr.,Sect.F 61 3 7 (2005)
PMID: 16508077 DOI: 10.1107/S1744309104021748

Abstact

The enzyme phospholipase A2 catalyzes the hydrolysis of the sn-2 acyl chain of phospholipids, forming fatty acids and lysophospholipids. The crystal structure of a triple mutant (K53,56,121M) of bovine pancreatic phospholipase A2 in which the lysine residues at positions 53, 56 and 121 are replaced recombinantly by methionines has been determined at atomic resolution (0.97 A). The crystal is monoclinic (space group P2), with unit-cell parameters a = 36.934, b = 23.863, c = 65.931 A, beta = 101.47 degrees. The structure was solved by molecular replacement and has been refined to a final R factor of 10.6% (Rfree = 13.4%) using 63,926 unique reflections. The final protein model consists of 123 amino-acid residues, two calcium ions, one chloride ion, 243 water molecules and six 2-methyl-2,4-pentanediol molecules. The surface-loop residues 60-70 are ordered and have clear electron density.

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Primary Citation of related structures
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