1VFP image
Deposition Date 2004-04-18
Release Date 2004-07-06
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1VFP
Keywords:
Title:
Crystal structure of the SR CA2+-ATPase with bound AMPPCP
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sarcoplasmic/endoplasmic reticulum calcium ATPase 1
Gene (Uniprot):ATP2A1
Chain IDs:A, B
Chain Length:994
Number of Molecules:2
Biological Source:Oryctolagus cuniculus
Primary Citation
Crystal structure of the calcium pump with a bound ATP analogue.
Nature 430 529 535 (2004)
PMID: 15229613 DOI: 10.1038/nature02680

Abstact

P-type ATPases are ATP-powered ion pumps that establish ion concentration gradients across cell and organelle membranes. Here, we describe the crystal structure of the Ca2+ pump of skeletal muscle sarcoplasmic reticulum, a representative member of the P-type ATPase superfamily, with an ATP analogue, a Mg2+ and two Ca2+ ions in the respective binding sites. In this state, the ATP analogue reorganizes the three cytoplasmic domains (A, N and P), which are widely separated without nucleotide, by directly bridging the N and P domains. The structure of the P-domain itself is altered by the binding of the ATP analogue and Mg2+. As a result, the A-domain is tilted so that one of the transmembrane helices moves to lock the cytoplasmic gate of the transmembrane Ca2+-binding sites. This appears to be the mechanism for occluding the bound Ca2+ ions, before releasing them into the lumen of the sarcoplasmic reticulum.

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