1VFI image
Deposition Date 2004-04-13
Release Date 2005-03-22
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1VFI
Title:
Solution Structure of Vanabin2 (RUH-017), a Vanadium-binding Protein from Ascidia sydneiensis samea
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the least restraint violations, structures with the lowest energy, target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:vanadium-binding protein 2
Gene (Uniprot):VANABIN2
Chain IDs:A
Chain Length:95
Number of Molecules:1
Biological Source:Ascidia sydneiensis samea
Ligand Molecules
Primary Citation
Solution Structure of Vanabin2, a Vanadium(IV)-Binding Protein from the Vanadium-Rich Ascidian Ascidia sydneiensis samea
J.Am.Chem.Soc. 127 4216 4222 (2005)
PMID: 15783203 DOI: 10.1021/ja042687j

Abstact

Ascidians belonging to the suborder Phlebobranchia are known to accumulate high levels of a transition metal, vanadium, in their blood cells, called vanadocytes, although the mechanism for this biological phenomenon remains unclear. Recently, we identified vanadium(IV)-binding proteins, designated as Vanabins, from vanadium-accumulating ascidians. Here, we report the first 3D structure of Vanabin2 from an ascidian, Ascidia sydneiensis samea, in an aqueous solution. The structure revealed a novel bow-shaped conformation, with four alpha-helices connected by nine disulfide bonds. There are no structural homologues reported so far. The 15N heteronuclear single-quantum coherence (HSQC) perturbation experiments of Vanabin2 indicated that vanadyl cations, which are exclusively localized on the same face of the molecule, are coordinated by amine nitrogens derived from amino acid residues such as lysines, arginines, and histidines, as suggested by the electron paramagnetic resonance (EPR) results. The present NMR studies provide information that will contribute toward elucidating the mechanism of vanadium accumulation in ascidians.

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