1V9U image
Deposition Date 2004-02-03
Release Date 2004-05-04
Last Version Date 2024-10-09
Entry Detail
PDB ID:
1V9U
Keywords:
Title:
Human Rhinovirus 2 bound to a fragment of its cellular receptor protein
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Human rhinovirus 2 (Taxon ID: 12130)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
R-Value Free:
0.29
R-Value Work:
0.28
Space Group:
P 21 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Coat protein VP1
Chain IDs:A (auth: 1)
Chain Length:289
Number of Molecules:1
Biological Source:Human rhinovirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Coat protein VP2
Chain IDs:B (auth: 2)
Chain Length:261
Number of Molecules:1
Biological Source:Human rhinovirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Coat protein VP3
Chain IDs:C (auth: 3)
Chain Length:237
Number of Molecules:1
Biological Source:Human rhinovirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Coat protein VP4
Chain IDs:D (auth: 4)
Chain Length:68
Number of Molecules:1
Biological Source:Human rhinovirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LDL-receptor class A 3
Gene (Uniprot):VLDLR
Chain IDs:E (auth: 5)
Chain Length:41
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
X-ray structure of a minor group human rhinovirus bound to a fragment of its cellular receptor protein
NAT.STRUCT.MOL.BIOL. 11 429 434 (2004)
PMID: 15064754 DOI: 10.1038/nsmb753

Abstact

Although many viral receptors have been identified, the ways in which they interact with their cognate viruses are not understood at the molecular level. We have determined the X-ray structure of a complex between calcium-containing modules of the very low-density lipoprotein receptor and the minor group human rhinovirus HRV2. The receptor binds close to the icosahedral five-fold vertex, with only one module per virus protomer. The binding face of this module is defined by acidic calcium-chelating residues and, in particular, by an exposed tryptophan that is highly conserved. The attachment site on the virus involves only residues from VP1, particularly a lysine strictly conserved in all minor group HRVs. The disposition of the attached ligand-binding repeats around the five-fold axis, together with the proximity of the N- and C-terminal ends of adjacent modules, suggests that more than one repeat in a single receptor molecule might attach simultaneously.

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Primary Citation of related structures