1V7N image
Deposition Date 2003-12-18
Release Date 2004-03-02
Last Version Date 2024-10-09
Entry Detail
PDB ID:
1V7N
Title:
Human Thrombopoietin Functional Domain Complexed To Neutralizing Antibody TN1 Fab
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.30
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Monoclonal TN1 Fab Heavy Chain
Chain IDs:B (auth: H), D (auth: I), F (auth: J), H (auth: K)
Chain Length:217
Number of Molecules:4
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Monoclonal TN1 Fab Light Chain
Chain IDs:A (auth: L), C (auth: M), E (auth: N), G (auth: O)
Chain Length:213
Number of Molecules:4
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Thrombopoietin
Gene (Uniprot):THPO
Mutations:Q115R
Chain IDs:I (auth: V), J (auth: X), K (auth: Y), L (auth: Z)
Chain Length:163
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Structure of the receptor-binding domain of human thrombopoietin determined by complexation with a neutralizing antibody fragment
Proc.Natl.Acad.Sci.USA 101 1816 1821 (2004)
PMID: 14769915 DOI: 10.1073/pnas.0308530100

Abstact

The cytokine thrombopoietin (TPO), the ligand for the hematopoietic receptor c-Mpl, acts as a primary regulator of megakaryocytopoiesis and platelet production. We have determined the crystal structure of the receptor-binding domain of human TPO (hTPO(163)) to a 2.5-A resolution by complexation with a neutralizing Fab fragment. The backbone structure of hTPO(163) has an antiparallel four-helix bundle fold. The neutralizing Fab mainly recognizes the C-D crossover loop containing the species invariant residue Q111. Titration calorimetric experiments show that hTPO(163) interacts with soluble c-Mpl containing the extracellular cytokine receptor homology domains with 1:2 stoichiometry with the binding constants of 3.3 x 10(9) M(-1) and 1.1 x 10(6) M(-1). The presence of the neutralizing Fab did not inhibit binding of hTPO(163) to soluble c-Mpl fragments, but the lower-affinity binding disappeared. Together with prior genetic data, these define the structure-function relationships in TPO and the activation scheme of c-Mpl.

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Primary Citation of related structures