1V6Q image
Deposition Date 2003-12-03
Release Date 2004-08-03
Last Version Date 2024-04-03
Entry Detail
PDB ID:
1V6Q
Title:
Crystal Structures of Collagen Model Peptides with Pro-Hyp-Gly Sequence at 1.3 A
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Resolution:
1.25 Å
R-Value Free:
0.18
R-Value Work:
0.13
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Collagen like peptide
Chain IDs:A
Chain Length:7
Number of Molecules:1
Biological Source:
Polymer Type:polypeptide(L)
Molecule:Collagen like peptide
Chain IDs:B
Chain Length:7
Number of Molecules:1
Biological Source:
Polymer Type:polypeptide(L)
Molecule:Collagen like peptide
Chain IDs:C
Chain Length:7
Number of Molecules:1
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HYP A PRO 4-HYDROXYPROLINE
Primary Citation
Crystal structures of collagen model peptides with Pro-Hyp-Gly repeating sequence at 1.26 A resolution: implications for proline ring puckering
Biopolymers 76 367 377 (2004)
PMID: 15386273 DOI: 10.1002/bip.20107

Abstact

Triple-helical structures of (Pro-Hyp-Gly)n (n = 10, 11) at 100 K and room temperature (RT) were analyzed at 1.26 A resolution by using synchrotron radiation data. Totals of 49 and 42 water molecules per seven triplets in an asymmetric unit were found for the structures at 100 K and RT, respectively. These water molecules were classified into two groups, those in the first and second hydration shells. Although there was no significant difference between water molecules in the first shell at 100 K and those at RT, a significant difference between those in the second shell was observed. That is, the number of water molecules at RT decreased to one half and the average distance from peptide chains at RT became longer by about 0.3 A. On the other hand, of seven triplets in an asymmetric unit, three proline residues at the X position at 100 K clearly showed an up-puckering conformation, as opposed to the recent propensity-based hypothesis for the stabilization and destabilization of triple-helical structures by proline hydroxylation. This puckering was attributed to the interaction between proline rings and the surrounding water molecules at 100 K, which is much weaker at RT, as shown by longer average distance from peptide chains.

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