1V5W image
Deposition Date 2003-11-26
Release Date 2004-05-18
Last Version Date 2023-10-25
Entry Detail
PDB ID:
1V5W
Keywords:
Title:
Crystal structure of the human Dmc1 protein
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.34
R-Value Work:
0.29
R-Value Observed:
0.29
Space Group:
I 4 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Meiotic recombination protein DMC1/LIM15 homolog
Gene (Uniprot):DMC1
Chain IDs:A, B
Chain Length:343
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural basis for octameric ring formation and DNA interaction of the human homologous-pairing protein dmc1
Mol.Cell 14 363 374 (2004)
PMID: 15125839 DOI: 10.1016/S1097-2765(04)00218-7

Abstact

The human Dmc1 protein, a RecA/Rad51 homolog, is a meiosis-specific DNA recombinase that catalyzes homologous pairing. RecA and Rad51 form helical filaments, while Dmc1 forms an octameric ring. In the present study, we crystallized the full-length human Dmc1 protein and solved the structure of the Dmc1 octameric ring. The monomeric structure of the Dmc1 protein closely resembled those of the human and archaeal Rad51 proteins. In addition to the polymerization motif that was previously identified in the Rad51 proteins, we found another hydrogen bonding interaction at the polymer interface, which could explain why Dmc1 forms stable octameric rings instead of helical filaments. Mutagenesis studies identified the inner and outer basic patches that are important for homologous pairing. The inner patch binds both single-stranded and double-stranded DNAs, while the outer one binds single-stranded DNA. Based on these results, we propose a model for the interaction of the Dmc1 rings with DNA.

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