1V1D image
Deposition Date 2004-04-14
Release Date 2005-04-14
Last Version Date 2024-05-15
Entry Detail
PDB ID:
1V1D
Keywords:
Title:
Nucleophilic and General Acid Catalysis at Physiological pH by a Designed Miniature Esterase
Biological Source:
Source Organism:
BOS TAURUS (Taxon ID: 9913)
Method Details:
Experimental Method:
Conformers Calculated:
20
Conformers Submitted:
20
Selection Criteria:
NO VIOLATIONS
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PANCREATIC HORMONE
Gene (Uniprot):PPY
Mutations:YES
Chain IDs:A
Chain Length:31
Number of Molecules:1
Biological Source:BOS TAURUS
Ligand Molecules
Primary Citation
Nucleophilic and General Acid Catalysis at Physiological Ph by a Designed Miniature Esterase
Org.Biomol.Chem. 2 2175 ? (2004)
PMID: 15280952 DOI: 10.1039/B404730C

Abstact

A 31-residue peptide (Art-Est) was designed to catalyse the hydrolysis of p-nitrophenyl esters through histidine catalysis on the solvent exposed face of the alpha-helix of bovine pancreatic polypeptide. NMR spectroscopy indicated that Art-Est adopted a stable 3-dimensional structure in solution. Art-Est was an efficient catalyst with second order rate constants of up to 0.050 M(-1) s(-1). The activity of Art-Est was a consequence of the increased nucleophilicity of His-22, which had a reduced pK(a) value of 5.5 as a consequence of its interaction with His-18 and the positively charged Arg-25 and Arg-26. Mass spectrometry and NMR spectroscopy confirmed that the Art-Est catalysed hydrolysis of p-nitrophenyl esters proceeded through an acyl-enzyme intermediate. A solvent kinetic isotope effect of 1.8 indicated that the transition state preceding the acyl intermediate was stabilised through interaction with the protonated side-chain of His-18 and indicated a reaction mechanism similar to that generally observed for natural esterases. The involvement in the reaction of two histidine residues with different pK(a) values led to a bell-shaped dependence of the reaction rate on the pH of the solution. The catalytic behaviour of Art-Est indicated that designed miniature enzymes can act in a transparent mechanism based fashion with enzyme-like behaviour through the interplay of several amino acid residues.

Legend

Protein

Chemical

Disease

Primary Citation of related structures