ISDA: 1V0M

Deposition Date 2004-03-31

Release Date 2004-08-16

Last Version Date 2024-11-06

Entry Detail

PDB ID:

1V0M

Keywords:

HYDROLASE

Title:

Xylanase Xyn10a from Streptomyces lividans in complex with xylobio-deoxynojirimycin at pH 7.5

Biological Source:

Source Organism:

STREPTOMYCES LIVIDANS (Taxon ID: 1916)

Host Organism:

STREPTOMYCES LIVIDANS

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.07 Å

R-Value Free:

0.12

R-Value Work:

0.09

R-Value Observed:

0.09

Space Group:

P 21 21 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ENDO-1,4-BETA-XYLANASE A
Gene (Uniprot):xlnA
Chain IDs:A
Chain Length:313
Number of Molecules:1
Biological Source:STREPTOMYCES LIVIDANS

UniProt ID:P26514 Pfam ID:PF00331 EC:3.2.1.8

Ligand Molecules

IMD

XDN

XYP

Primary Citation

Atomic Resolution Analyses of the Binding of Xylobiose-Derived Deoxynojirimycin and Isofagomine to Xylanase Xyn10A

Gloster, T.M, Williams, S.J, Roberts, S, Tarling, C.A, Wicki, J, Withers, S.G, Davies, G.J.Show

Chem.Commun.(Camb.) 16 1794 ? (2004)

PMID: 15306887 DOI: 10.1039/B405152A

Abstact

The atomic resolution structures of xylobiose-derived isofagomine and xylobiose-derived deoxynojirimycin in complex with the xylanase Xyn10A from Streptomyces lividans reveal undistorted (4)C(1) chair conformed sugars and, in the case of the deoxynojirimycin analogue, suggest unusual pK(a) changes of the enzyme's catalytic machinery upon binding.

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Primary Citation of related structures