1UZ6 image
Deposition Date 2004-03-05
Release Date 2004-06-29
Last Version Date 2024-11-13
Entry Detail
PDB ID:
1UZ6
Keywords:
Title:
anti-Lewis X Fab fragment uncomplexed
Biological Source:
Source Organism:
MUS MUSCULUS (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.24
R-Value Work:
0.19
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:IGG FAB (IGG3, KAPPA) LIGHT CHAIN 291-2G3-A
Chain IDs:A (auth: E), D (auth: L), E (auth: M), G (auth: V)
Chain Length:218
Number of Molecules:4
Biological Source:MUS MUSCULUS
Polymer Type:polypeptide(L)
Molecule:IGG FAB (IGG3, KAPPA) HEAVY CHAIN 291-2G3-A
Chain IDs:B (auth: F), C (auth: H), F (auth: P), H (auth: W)
Chain Length:217
Number of Molecules:4
Biological Source:MUS MUSCULUS
Ligand Molecules
Primary Citation
Structure of an Anti-Lewis X Fab Fragment in Complex with its Lewis X Antigen
Structure 12 1227 ? (2004)
PMID: 15242599 DOI: 10.1016/J.STR.2004.05.008

Abstact

The Lewis X trisaccharide is pivotal in mediating specific cell-cell interactions. Monoclonal antibody 291-2G3-A, which was generated from mice infected with schistosomes, has been shown to recognize the Lewis X trisaccharide. Here we describe the structure of the Fab fragment of 291-2G3-A, with Lewis X, to 1.8 A resolution. The crystallographic analysis revealed that the antigen binding site is a rather shallow binding pocket, and residues from all six complementary determining regions of the antibody contact all sugar residues. The high specificity of the binding pocket does not result in high affinity; the K(D) determined by isothermal calorimetry is 11 microM. However, this affinity is in the same range as for other sugar-antibody complexes. The detailed understanding of the antibody-Lewis X interaction revealed by the crystal structure may be helpful in the design of better diagnostic tools for schistosomiasis and for studying Lewis X-mediated cell-cell interactions by antibody interference.

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Primary Citation of related structures