1UTY image
Deposition Date 2003-12-12
Release Date 2004-07-13
Last Version Date 2024-05-08
Entry Detail
PDB ID:
1UTY
Keywords:
Title:
Crystal structure of the RNA binding domain of Bluetongue virus non-structural protein 2(NS2)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 65
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NON-STRUCTURAL PROTEIN 2
Gene (Uniprot):Segment-8
Chain IDs:A, B
Chain Length:187
Number of Molecules:2
Biological Source:BLUETONGUE VIRUS
Primary Citation
Structure and Assembly of the RNA Binding Domain of Bluetongue Virus Non-Structural Protein 2
J.Biol.Chem. 279 37613 ? (2004)
PMID: 15155766 DOI: 10.1074/JBC.M400502200

Abstact

Bluetongue virus non-structural protein 2 belongs to a class of highly conserved proteins found in orbiviruses of the Reoviridae family. Non-structural protein 2 forms large multimeric complexes and localizes to cytoplasmic inclusions in infected cells. It is able to bind single-stranded RNA non-specifically, and it has been suggested that the protein is involved in the selection and condensation of the Bluetongue virus RNA segments prior to genome encapsidation. We have determined the x-ray structure of the N-terminal domain (sufficient for the RNA binding ability of non-structural protein 2) to 2.4 A resolution using anomalous scattering methods. Crystals of this apparently insoluble domain were obtained by in situ proteolysis of a soluble construct. The asymmetric unit shows two monomers related by non-crystallographic symmetry, with each monomer folded as a beta sandwich with a unique topology. The crystal structure reveals extensive monomer-monomer interactions, which explain the ability of the protein to self-assemble into large homomultimeric complexes. Of the entire surface area of the monomer, one-third is used to create the interfaces of the curved multimeric assembly observed in the x-ray structure. The structure reported here shows how the N-terminal domain would be able to bind single-stranded RNA non-specifically protecting the bound regions in a heterogeneous multimeric but not polymeric complex.

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