1URL image
Deposition Date 2003-10-31
Release Date 2004-10-20
Last Version Date 2023-12-13
Entry Detail
PDB ID:
1URL
Title:
N-TERMINAL DOMAIN OF SIALOADHESIN (MOUSE) IN COMPLEX WITH GLYCOPEPTIDE
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SIALOADHESIN
Gene (Uniprot):Siglec1
Chain IDs:A
Chain Length:118
Number of Molecules:1
Biological Source:MUS MUSCULUS
Polymer Type:polypeptide(L)
Molecule:ALA-GLY-HIS-THR-TRP-GLY-HIA
Chain IDs:B
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HIA B HIS L-HISTIDINE AMIDE
THR B THR GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Complex of Sialoadhesin with a Glycopeptide Ligand
Biochim.Biophys.Acta 1702 173 ? (2004)
PMID: 15488769 DOI: 10.1016/J.BBAPAP.2004.08.015

Abstact

Sialoadhesin is a sialic acid-binding immunoglobulin-like lectin (Siglec), expressed on subsets of macrophages. It is a model system for Siglec receptor-mediated cell surface interactions through binding of sialylated glycoconjugates. The N-terminal sialoadhesin domain can mediate sialic acid-binding on its own. The structure of this domain has been determined in complex with a sialic acid-containing heptapeptide, (Ala-Gly-His-Thr(Neu5Ac)-Trp-Gly-His). The affinity of sialoadhesin for this ligand is four times higher than the affinity for the natural linkage 2,3'-sialyllactose. The structure of the glycopeptide complex suggests strategies for ligand optimization and provides possible explanations for the observed differences in specificities among the Siglecs.

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Primary Citation of related structures