1UMK image
Deposition Date 2003-10-03
Release Date 2004-11-02
Last Version Date 2023-12-27
Entry Detail
PDB ID:
1UMK
Keywords:
Title:
The Structure of Human Erythrocyte NADH-cytochrome b5 Reductase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NADH-cytochrome b5 reductase
Gene (Uniprot):CYB5R3
Chain IDs:A
Chain Length:275
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of human erythrocyte NADH-cytochrome b5 reductase.
Acta Crystallogr.,Sect.D 60 1929 1934 (2004)
PMID: 15502298 DOI: 10.1107/S0907444904020645

Abstact

Erythrocyte NADH-cytochrome b(5) reductase reduces methaemoglobin to functional haemoglobin. In order to examine the function of the enzyme, the structure of NADH-cytochrome b(5) reductase from human erythrocytes has been determined and refined by X-ray crystallography. At 1.75 A resolution, the root-mean-square deviations (r.m.s.d.) from standard bond lengths and angles are 0.006 A and 1.03 degrees , respectively. The molecular structure was compared with those of rat NADH-cytochrome b(5) reductase and corn nitrate reductase. The human reductase resembles the rat reductase in overall structure as well as in many side chains. Nevertheless, there is a large main-chain shift from the human reductase to the rat reductase or the corn reductase caused by a single-residue replacement from proline to threonine. A model of the complex between cytochrome b(5) and the human reductase has been built and compared with that of the haem-containing domain of the nitrate reductase molecule. The interaction between cytochrome b(5) and the human reductase differs from that of the nitrate reductase because of differences in the amino-acid sequences. The structures around 15 mutation sites of the human reductase have been examined for the influence of residue substitutions using the program ROTAMER. Five mutations in the FAD-binding domain seem to be related to cytochrome b(5).

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Primary Citation of related structures