ISDA: 1UK0

Deposition Date 2003-08-13

Release Date 2004-01-27

Last Version Date 2023-12-27

Entry Detail

PDB ID:

1UK0

Keywords:

TRANSFERASE

Title:

Crystal structure of catalytic domain of human poly(ADP-ribose) polymerase with a novel inhibitor

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.00 Å

R-Value Free:

0.24

R-Value Work:

0.21

Space Group:

C 1 2 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Poly [ADP-ribose] polymerase-1
Gene (Uniprot):PARP1
Chain IDs:A, B
Chain Length:350
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P09874 Pfam ID:PF02877, PF00644 EC:2.4.2.30

Ligand Molecules

FRM

Primary Citation

Inhibitor-induced structural change of the active site of human poly(ADP-ribose) polymerase.

Kinoshita, T, Nakanishi, I, Warizaya, M, Iwashita, A, Kido, Y, Hattori, K, Fujii, T.Show

Febs Lett. 556 43 46 (2004)

PMID: 14706823 DOI: 10.1016/S0014-5793(03)01362-0

Abstact

The crystal structure of human recombinant poly(ADP-ribose) polymerase (PARP) complexed with a potent inhibitor, FR257517, was solved at 3.0 A resolution. The fluorophenyl part of the inhibitor induces an amazing conformational change in the active site of PARP by motion of the side chain of the amino acid, Arg878, which forms the bottom of the active site. Consequently, a corn-shaped hydrophobic subsite, which consists of the side chains of Leu769, Ile879, Pro881, and the methylene chain of Arg878, newly emerges from the well-known active site.

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Primary Citation of related structures