1UIJ image
Deposition Date 2003-07-16
Release Date 2004-07-16
Last Version Date 2023-12-27
Entry Detail
PDB ID:
1UIJ
Title:
Crystal Structure Of Soybean beta-Conglycinin Beta Homotrimer (I122M/K124W)
Biological Source:
Source Organism:
Glycine max (Taxon ID: 3847)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.27
R-Value Work:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:beta subunit of beta conglycinin
Gene (Uniprot):CG-4
Mutations:I122M/K124W
Chain IDs:A, B, C, D, E, F
Chain Length:416
Number of Molecules:6
Biological Source:Glycine max
Primary Citation
Creation of soybean beta-conglycinin beta with strong phagocytosis-stimulating activity
BIOCHIM.BIOPHYS.ACTA 1648 99 104 (2003)
PMID: 12758152 DOI: 10.1016/S1570-9639(03)00113-4

Abstact

beta-Conglycinin is composed of three kinds of subunit: alpha, alpha' and beta. A phagocytosis-stimulating peptide sequence (MITLAIPVNKPGR), soymetide, exists in the alpha' subunit of beta-conglycinin. Met at N terminus of the soymetide is essential for the activity. When Thr at the third residue from N terminus of the soymetide is replaced by Phe or Trp, the phagocytosis-stimulating activity greatly increases (Thr<Phe<Trp). The beta subunit does not exhibit the phagocytosis-stimulating activity because the residues corresponding to the first and third residues in the soymetide are Ile and Lys, respectively. In this study, we introduced the phagocytosis-stimulating peptide sequence (Ile-->Met, Lys-->Thr, Phe, or Trp) into the beta subunit after confirmation of the effects of residue replacements by molecular modeling, suggesting that the introduced mutations might not prevent the correct folding. The studies of circular dichroism (CD), gel filtration and differential scanning calorimetry (DSC) of the mutants (I122M/K124T, I122M/K124F, I122M/K124W) expressed in E. coli demonstrated that they folded and self-assembled similarly to the wild type. This was confirmed by X-ray analysis of I122M/K124W crystal where the biggest residue tryptophane was introduced. The three mutants exhibited phagocytosis activities after digestion by trypsin, and the order was the wild type<I122M/K124T<I122M/K124F<I122M/K124W as expected.

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