1UF2 image
Deposition Date 2003-05-23
Release Date 2003-10-14
Last Version Date 2024-04-03
Entry Detail
PDB ID:
1UF2
Keywords:
Title:
The Atomic Structure of Rice dwarf Virus (RDV)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.30
R-Value Work:
0.30
R-Value Observed:
0.30
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Core protein P3
Chain IDs:A, B
Chain Length:1019
Number of Molecules:2
Biological Source:Rice dwarf virus
Polymer Type:polypeptide(L)
Molecule:Structural protein P7
Chain IDs:P (auth: K)
Chain Length:506
Number of Molecules:1
Biological Source:Rice dwarf virus
Polymer Type:polypeptide(L)
Molecule:Outer capsid protein P8
Chain IDs:C (auth: P), D (auth: C), E (auth: D), F (auth: Q), G (auth: E), H (auth: F), I (auth: R), J (auth: G), K (auth: H), L (auth: S), M (auth: I), N (auth: J), O (auth: T)
Chain Length:421
Number of Molecules:13
Biological Source:Rice dwarf virus
Ligand Molecules
Primary Citation
The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins.
Structure 11 1227 1238 (2003)
PMID: 14527391 DOI: 10.1016/j.str.2003.08.012

Abstact

Rice dwarf virus (RDV), the causal agent of rice dwarf disease, is a member of the genus Phytoreovirus in the family Reoviridae. RDV is a double-shelled virus with a molecular mass of approximately 70 million Dalton. This virus is widely prevalent and is one of the viruses that cause the most economic damage in many Asian countries. The atomic structure of RDV was determined at 3.5 A resolution by X-ray crystallography. The double-shelled structure consists of two different proteins, the core protein P3 and the outer shell protein P8. The atomic structure shows structural and electrostatic complementarities between both homologous (P3-P3 and P8-P8) and heterologous (P3-P8) interactions, as well as overall conformational changes found in P3-P3 dimer caused by the insertion of amino-terminal loop regions of one of the P3 protein into the other. These interactions suggest how the 900 protein components are built into a higher-ordered virus core structure.

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Disease

Primary Citation of related structures