1UAD image
Deposition Date 2003-03-09
Release Date 2003-07-15
Last Version Date 2023-10-25
Entry Detail
PDB ID:
1UAD
Title:
Crystal structure of the RalA-GppNHp-Sec5 Ral-binding domain complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Rattus norvegicus (Taxon ID: 10116)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
I 4
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ras-related protein Ral-A
Gene (Uniprot):RALA
Chain IDs:A, B
Chain Length:175
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Exocyst complex component Sec5
Gene (Uniprot):Exoc2
Chain IDs:C, D
Chain Length:99
Number of Molecules:2
Biological Source:Rattus norvegicus
Primary Citation
Structural basis of the interaction between RalA and Sec5, a subunit of the Sec6/8 complex
EMBO J. 22 3267 3278 (2003)
PMID: 12839989 DOI: 10.1093/emboj/cdg329

Abstact

The sec6/8 complex or exocyst is an octameric protein complex that functions during cell polarization by regulating the site of exocytic vesicle docking to the plasma membrane, in concert with small GTP-binding proteins. The Sec5 subunit of the mammalian sec6/8 complex binds Ral in a GTP-dependent manner. Here we report the crystal structure of the complex between the Ral-binding domain of Sec5 and RalA bound to a non-hydrolyzable GTP analog (GppNHp) at 2.1 A resolution, providing the first structural insights into the mechanism and specificity of sec6/8 regulation. The Sec5 Ral-binding domain folds into an immunoglobulin-like beta-sandwich structure, which represents a novel fold for an effector of a GTP-binding protein. The interface between the two proteins involves a continuous antiparallel beta-sheet, similar to that found in other effector/G-protein complexes, such as Ras and Rap1A. Specific interactions unique to the RalA.Sec5 complex include Sec5 Thr11 and Arg27, and RalA Glu38, which we show are required for complex formation by isothermal titration calorimetry. Comparison of the structures of GppNHp- and GDP-bound RalA suggests a nucleotide-dependent switch mechanism for Sec5 binding.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback