1U5I image
Deposition Date 2004-07-27
Release Date 2005-01-18
Last Version Date 2024-05-29
Entry Detail
PDB ID:
1U5I
Keywords:
Title:
Crystal Structure analysis of rat m-calpain mutant Lys10 Thr
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.86 Å
R-Value Free:
0.28
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Calpain 2, large [catalytic] subunit precursor
Gene (Uniprot):Capn2
Mutagens:K10T, C105S
Chain IDs:A
Chain Length:700
Number of Molecules:1
Biological Source:Rattus norvegicus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Calpain small subunit 1
Gene (Uniprot):Capns1
Chain IDs:B
Chain Length:184
Number of Molecules:1
Biological Source:Rattus norvegicus
Primary Citation
Activation of calpain by Ca2+: roles of the large subunit N-terminal and domain III-IV linker peptides
J.Mol.Biol. 343 1049 1053 (2004)
PMID: 15476820 DOI: 10.1016/j.jmb.2004.08.073

Abstact

The calpains are a family of cysteine proteases with closely related amino acid sequences, but a wide range of Ca(2+) requirements (K(d)). For m-calpain, K(d) is approximately 325microM, for mu-calpain it is approximately 50microM, and for calpain 3 it is not strictly known but may be approximately 0.1microM. On the basis of previous structure determination of m-calpain we postulated that two regions of the calpain large subunits, the N-terminal peptide (residues 1-20) and a domain III-IV linker peptide (residues 514-530 in m-calpain) were important in defining K(d). The mutations Lys10Thr in the N-terminal peptide, and Glu517Pro in the domain linker peptide, reduced K(d) of m-calpain by 30% and 42%, respectively, revealing that these two regions are functionally important. The increased Ca(2+)-sensitivity of these mutants demonstrate that the Lys10-Asp148 salt link and the short beta-sheet interaction involving Glu517 are factors contributing to the high K(d) of m-calpain. Though these two regions are physically remote from the active site and Ca(2+)-binding site, they play significant roles in regulating the response of calpain to Ca(2+). Differences in these interactions in mu-calpain and in calpain 3 are also consistent with their progressively lower K(d) values.

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Primary Citation of related structures
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