ISDA

Entry Detail

PDB ID:

1TEZ

Keywords:

LYASE/DNA

Title:

COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS

Biological Source:

Source Organism:

Synechococcus elongatus PCC 6301, synthetic construct

Host Organism:

Escherichia coli

PDB Version:

Deposition Date:

2004-05-26

Release Date:

2004-12-14

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.80 Å

R-Value Free:

0.22

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

C 1 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Deoxyribodipyrimidine photo-lyase type I
Chain IDs:I (auth: A), J (auth: B), K (auth: C), L (auth: D)
Chain Length:474
Number of Molecules:4
Biological Source:Synechococcus elongatus PCC 6301

UniProt ID:P05327 Pfam ID:PF00875, PF03441 EC:4.1.99.3

Polymer Type:polydeoxyribonucleotide
Description:5'-D(*AP*TP*CP*GP*GP*CP*T*(TCP)P*CP*GP*C)-3'
Chain IDs:A (auth: I), C (auth: K)
Chain Length:11
Number of Molecules:2
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Description:5'-D(P*CP*GP*AP*AP*GP*CP*CP*GP*A)-3'
Chain IDs:B (auth: J), D (auth: L)
Chain Length:9
Number of Molecules:2
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Description:5'-D(*TP*CP*GP*C)-3'
Chain IDs:E (auth: M), G (auth: O)
Chain Length:4
Number of Molecules:2
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Description:5'-D(P*GP*CP*CP*GP*A)-3'
Chain IDs:F (auth: N), H (auth: P)
Chain Length:5
Number of Molecules:2
Biological Source:synthetic construct

Ligand Molecules

FAD

HDF

Primary Citation

Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair

Mees, A, Klar, T, Gnau, P, Hennecke, U, Eker, A.P.M, Carell, T, Essen, L.-O, Tamada, T, Kitadokoro, K, Higuchi, Y, Inaka, K, Yasui, A, De Ruiter, P.E, Eker, A.P, Miki, K.Show

Science 306 1789 1793 (2004)

PMID: 15576622 DOI: 10.1126/science.1101598

Abstact

DNA photolyases use light energy to repair DNA that comprises ultraviolet-induced lesions such as the cis-syn cyclobutane pyrimidine dimers (CPDs). Here we report the crystal structure of a DNA photolyase bound to duplex DNA that is bent by 50 degrees and comprises a synthetic CPD lesion. This CPD lesion is flipped into the active site and split there into two thymines by synchrotron radiation at 100 K. Although photolyases catalyze blue light-driven CPD cleavage only above 200 K, this structure apparently mimics a structural substate during light-driven DNA repair in which back-flipping of the thymines into duplex DNA has not yet taken place.

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Primary Citation of related structures