1TDT image
Deposition Date 1996-11-19
Release Date 1997-06-05
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1TDT
Keywords:
Title:
THREE-DIMENSIONAL STRUCTURE OF TETRAHYDRODIPICOLINATE-N-SUCCINYLTRANSFERASE
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.23
R-Value Work:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TETRAHYDRODIPICOLINATE-N-SUCCINYLTRANSFERASE
Gene (Uniprot):dapD
Chain IDs:A, B, C
Chain Length:259
Number of Molecules:3
Biological Source:Mycobacterium bovis
Primary Citation
Three-dimensional structure of tetrahydrodipicolinate N-succinyltransferase.
Biochemistry 36 489 494 (1997)
PMID: 9012664 DOI: 10.1021/bi962522q

Abstact

The conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA is catalyzed by tetrahydrodipicolinate N-succinyltransferase and is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The X-ray crystal structure of THDP succinyltransferase has been determined to 2.2 A resolution and has been refined to a crystallographic R-factor of 17.0%. The enzyme is trimeric and displays the left-handed parallel beta-helix (L beta H) structural motif encoded by the "hexapeptide repeat" amino acid sequence motif [Raetz, C.R.H., & Roderick, S.L. (1995) Science 270, 997-1000]. The approximate location of the active site of THDP succinyltransferase is suggested by the proximity of binding sites for two inhibitors: p-(chloromercuri)benzenesulfonic acid and cobalt ion, both of which bind to the L beta H domain.

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Primary Citation of related structures
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