1T5N image
Deposition Date 2004-05-04
Release Date 2004-08-31
Last Version Date 2025-03-26
Entry Detail
PDB ID:
1T5N
Keywords:
Title:
Structural transitions as determinants of calcium-dependent antibiotic daptomycin
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
17
Selection Criteria:
structures with the least restraint violations
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DAPTOMYCIN
Chain IDs:A
Chain Length:13
Number of Molecules:1
Biological Source:STREPTOMYCES ROSEOSPORUS
Ligand Molecules
Peptide-like Molecules
PRD_000217
Primary Citation
Structural Transitions as Determinants of the Action of the Calcium-Dependent Antibiotic Daptomycin.
Chem.Biol. 11 949 ? (2004)
PMID: 15271353 DOI: 10.1016/J.CHEMBIOL.2004.04.020

Abstact

Daptomycin is a cyclic anionic lipopeptide antibiotic recently approved for the treatment of complicated skin infections (Cubicin). Its function is dependent on calcium (as Ca2+). Circular dichroism spectroscopy indicated that daptomycin experienced two structural transitions: a transition upon interaction of daptomycin with Ca2+, and a further transition upon interaction with Ca2+ and the bacterial acidic phospholipid, phosphatidyl glycerol. The Ca2+-dependent insertion of daptomycin into model membranes promoted mild and more pronounced perturbations as assessed by the increase of lipid flip-flop and membrane leakage, respectively. The NMR structure of daptomycin indicated that Ca2+ induced a conformational change in daptomycin that increased its amphipathicity. These results are consistent with the hypothesis that the association of Ca2+ with daptomycin permits it to interact with bacterial membranes with effects that are similar to those of the cationic antimicrobial peptides.

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Primary Citation of related structures