1T3E image
Deposition Date 2004-04-26
Release Date 2004-07-27
Last Version Date 2024-04-03
Entry Detail
PDB ID:
1T3E
Title:
Structural basis of dynamic glycine receptor clustering
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.25 Å
R-Value Free:
0.30
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 61
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Gephyrin
Gene (Uniprot):Gphn
Chain IDs:A, B
Chain Length:421
Number of Molecules:2
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:49-mer fragment of Glycine receptor beta chain
Gene (Uniprot):Glrb
Chain IDs:C (auth: P)
Chain Length:49
Number of Molecules:1
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Structural basis of dynamic glycine receptor clustering by gephyrin
Embo J. 23 2510 2519 (2004)
PMID: 15201864 DOI: 10.1038/sj.emboj.7600256

Abstact

Gephyrin is a bi-functional modular protein involved in molybdenum cofactor biosynthesis and in postsynaptic clustering of inhibitory glycine receptors (GlyRs). Here, we show that full-length gephyrin is a trimer and that its proteolysis in vitro causes the spontaneous dimerization of its C-terminal region (gephyrin-E), which binds a GlyR beta-subunit-derived peptide with high and low affinity. The crystal structure of the tetra-domain gephyrin-E in complex with the beta-peptide bound to domain IV indicates how membrane-embedded GlyRs may interact with subsynaptic gephyrin. In vitro, trimeric full-length gephyrin forms a network upon lowering the pH, and this process can be reversed to produce stable full-length dimeric gephyrin. Our data suggest a mechanism by which induced conformational transitions of trimeric gephyrin may generate a reversible postsynaptic scaffold for GlyR recruitment, which allows for dynamic receptor movement in and out of postsynaptic GlyR clusters, and thus for synaptic plasticity.

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Primary Citation of related structures